rs220114668 SNP Detail

Summary

• ID
  rs220114668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110249883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT TCTCTGTTGC TTCTTTAGAA
  Y
  CCTGCTACCA ATATCCCACT CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902760	MGP_WTSI_9_110323319	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220114668					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902760	MGP_WTSI_9_110323319	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110249883 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ngp	neutrophilic granule protein			Coding-Synonymous
				Splice-Site
Tssr3020	transcription start site region 3020			70 bp upstream
Tssr3021	transcription start site region 3021			474 bp downstream
Tssr3022	transcription start site region 3022			917 bp downstream
Tssr3023	transcription start site region 3023			1553 bp downstream
Tssr3024	transcription start site region 3024			1576 bp downstream
Tssr3025	transcription start site region 3025			1655 bp downstream
Tssr3026	transcription start site region 3026			1711 bp downstream
Tssr3027	transcription start site region 3027			1794 bp downstream
Tssr3028	transcription start site region 3028			1872 bp downstream
Tssr3029	transcription start site region 3029			1887 bp downstream
Tssr3030	transcription start site region 3030			1908 bp downstream
Tssr87360	transcription start site region 87360			1006 bp downstream
Tssr87361	transcription start site region 87361			953 bp downstream
Tssr87362	transcription start site region 87362			698 bp downstream
Tssr87363	transcription start site region 87363			within coordinates
Tssr87364	transcription start site region 87364			19 bp upstream
Tssr87365	transcription start site region 87365			96 bp upstream
Tssr87366	transcription start site region 87366			878 bp upstream
Tssr87367	transcription start site region 87367			895 bp upstream
Tssr87368	transcription start site region 87368			1451 bp upstream
Tssr87369	transcription start site region 87369			1476 bp upstream
Tssr87370	transcription start site region 87370			1509 bp upstream
Tssr87371	transcription start site region 87371			1548 bp upstream
Tssr87372	transcription start site region 87372			1604 bp upstream
Tssr87373	transcription start site region 87373			1634 bp upstream
Tssr87374	transcription start site region 87374			1675 bp upstream
Tssr87375	transcription start site region 87375			1693 bp upstream
Tssr87376	transcription start site region 87376			1715 bp upstream
Tssr87377	transcription start site region 87377			1723 bp upstream
Tssr87378	transcription start site region 87378			1773 bp upstream
Tssr87379	transcription start site region 87379			1823 bp upstream
Tssr91614	transcription start site region 91614			852 bp upstream
Tssr91615	transcription start site region 91615			818 bp upstream
Tssr91616	transcription start site region 91616			46 bp downstream
Tssr91617	transcription start site region 91617			61 bp downstream
Tssr91618	transcription start site region 91618			93 bp downstream
Tssr91619	transcription start site region 91619			1490 bp downstream
Tssr91620	transcription start site region 91620			1594 bp downstream
Tssr91621	transcription start site region 91621			1689 bp downstream
Tssr91622	transcription start site region 91622			1731 bp downstream