rs220112369 SNP Detail

Summary

• ID
  rs220112369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108969626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATTTAC CTCAACTGTG
  GGAAACCAGA AAGTCTGGGG TGACATTCTC CCTCAGAGAT TCTGATTGCC TTGATTTTTT
  TTTCAATGAC ATTTAAAAAA ATTCTCTTTA TATCCCAATC ACAGCTCCGC CCCAAGTCCC
  ACCCTTACAA GTCCCTCTCC CCCACACCCC CACTGCTTAG ATTTTGATCT TCTGGCCTCC
  Y
  GAACTCAGAG TACATTTCTG TTGTCTTAAA TCACCTGTTT CTGGTAATTT ACTGTAGCAG
  CCTGAGAAAA CTGCCTTAGC TCAAACTTAA ACAACCCCCC ACCCCCAAAC CAAACCAAAA
  AACCCCAAAA ACCCAAACCC AAACCAAAAA ACCAAACAAT AACAAAAAAA CAAAACAAAA
  CAAAAAACCC CAACTCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867473	CHEV_3_108865228	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220112369					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108969626 () rs orientation: forward

Symbol	Name	Function Class
Gm36778	predicted gene, 36778	within coordinates
Rr397947	regulatory region 397947	707 bp upstream
Rr583384	regulatory region 583384	755 bp proximal
Rr583385	regulatory region 583385	888 bp proximal