rs220056639 SNP Detail

Summary

• ID
  rs220056639
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104434190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCTCTAG AATAAgaggt gtggcctagc
  agctgagtgt ttgcctagca tgttcaagga cttgggtttt atcctcaatg tcagggagaa
  acgaagagaa aaagaaaaag aaaaagaaaa aggaaaagga aaaggaaaag gaaaagaaaa
  M
  gaaaaagaag aaaaagaaaa ggaaaaagaa aaagaaaaag aagaaaaaga aaaggaaaaa
  gaaaaagaaa cagaaagaaa aagaaaaaga aaaagaaaaa gaaaaaaaaa aacacaagaa
  aaGAGATCCT Tgcctgcttt cttctagaac                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320861087	CHEV_3_104330797	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220056639					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104434190 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	221 bp upstream
Rr582533	regulatory region 582533	1075 bp distal
Rr582534	regulatory region 582534	55 bp distal
Rr582535	regulatory region 582535	1023 bp proximal