rs220049729 SNP Detail

Summary

• ID
  rs220049729
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139516909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC AGTAGGTAAG ATACCCTCTC
  C
  TGTATGTCTG AAGGACCCTA GGCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321384515	CHEV_4_139345513	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220049729					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139516909 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	Intron
Rr603302	regulatory region 603302	278 bp proximal
Rr603303	regulatory region 603303	367 bp proximal
Rr603304	regulatory region 603304	1610 bp proximal