rs220020138 SNP Detail

Summary

• ID
  rs220020138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31364612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGAGA CAGCGGACGT
  TGCTGAATCG CTCTTCAATT ATTCAGATTG AAACCCCTCC GCACCCCTCC CGCGCCTGCC
  AGTTTGCTCT CCAGCTTGCC TATCTCCGCC TCCTTGTAAT CACGTGGCTA ACCCAGCCCT
  TTCCATTACC GAGTCCTAGC ACCACTCCCG CCGCCCCTTC CCGCACCCCC CCGCCCCCCC
  M
  CCCCGCCCCC CGGGTCTGTC ACTCACTACA CCTCACCCGC CTTCCAGGTG CGGCCTCCAG
  CCTCTGCTAC CTTTCTGGTG CTTGGAGCAG AGGAGCCCGG GCAGTTCTAT GCTCTGGGAA
  GGCAGGGTGG GGTAGGACTC TGCAGTGTCG CTGTACTGTT TGGGCTGGCT TCTGCCAACA
  GCTCCACCTC TCCTGGATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss357438461	MGP_WTSI_3_31209385	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs220020138					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357438461	MGP_WTSI_3_31209385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31364612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13053	CpG island 13053	71 bp distal
Gm15496	predicted gene 15496	within coordinates
Rr574907	regulatory region 574907	96 bp distal
Rr574908	regulatory region 574908	3 bp distal
Rr574909	regulatory region 574909	within coordinates
Slc7a14	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	Intron
Tssr32914	transcription start site region 32914	232 bp upstream
Tssr32915	transcription start site region 32915	198 bp upstream
Tssr32916	transcription start site region 32916	139 bp upstream
Tssr32917	transcription start site region 32917	90 bp upstream