rs220019130 SNP Detail

Summary

• ID
  rs220019130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59801715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGGAGG TGGATGTTGG
  GTGTTACCTA CAAGCAATTA CTGCATCATC ATTATCATCA GATTCTTCTT CTTCTTCTTC
  TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC
  TCCACCTCCT GCCCCCTCCC CCTCCTCCTC CCCTTCCTCC TCCTCCTCCT TTAACAGAGT
  Y
  TCAACTTTAA CCTGGAGCTC AGGGATTTGG TTAGCCTGGC TGGCCAGTCA GCCTCTAGGA
  TTTCCTTGTT TCCCCTGCTC TGCTGTTGCA TCTGACTTTT TTTTAAAGGA TTTATTTATA
  TTTGTATGTG TGTGAGTGCC TGACACCAAT TGAGACTAGA GAAAAACATC AGATCCCTTG
  GAACTGGAGT TACAGGTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141404	CHEV_4_59814587	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220019130					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59801715 () rs orientation: forward

Symbol	Name	Function Class
Rr398296	regulatory region 398296	1691 bp upstream
Rr593142	regulatory region 593142	777 bp proximal