rs220017955 SNP Detail

Summary

• ID
  rs220017955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107225048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTTCTA GGACACCCCA
  ACTTGCTTCT CGTTACACCG CGAGCCTGTA CTTTGGAACT CCAAGTTCCA GAATGCAACG
  CTCCTCTTCC CCTTGGTTCT CAGGGGTCGT CGAGACTACA GTTCCCAGCA TGCAGCACCG
  TCGCCCTTTG TTTTTGACGC CCAGATGGAC CCTGCTTCGG AAGGACTTTT TGGACTCCAG
  R
  GGACGCTTCC TCGAGTCACA GCCCACCTGG AGGCATGTGG CTACGGGGAA GTTCTGGCCG
  GTTGAGTCTG TTCAGGCGAA GCTGCGGAGA GATGGTCTGG CGGCTTTGCA GAACCCTGCC
  CAGGCAGCGT ACCGGGCAGC CCCAGCTGGG TCCTCCCGGG GCCTTCCTGC CTTTGAACAG
  TGGTGGCGGG CGGACACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362757902	MGP_WTSI_4_107040456	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220017955					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362757902	MGP_WTSI_4_107040456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107225048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	within coordinates
Ndc1	NDC1 transmembrane nucleoporin	mRNA-UTR
Rr367664	regulatory region 367664	within coordinates
Rr596979	regulatory region 596979	57 bp distal
Rr596980	regulatory region 596980	462 bp distal
Rr596981	regulatory region 596981	within coordinates
Rr596982	regulatory region 596982	within coordinates
Rr596983	regulatory region 596983	433 bp proximal
Tssr38245	transcription start site region 38245	97 bp downstream
Tssr38246	transcription start site region 38246	38 bp downstream
Tssr38247	transcription start site region 38247	153 bp upstream
Tssr38248	transcription start site region 38248	188 bp upstream
Tssr38249	transcription start site region 38249	210 bp upstream
Tssr38250	transcription start site region 38250	224 bp upstream
Tssr38251	transcription start site region 38251	470 bp upstream