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rs219990823 SNP Detail
Summary
  • ID
    rs219990823
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:117150457 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACATCCTTA GCACGTCCCT
AACTCTGCGG TGGTGGTCCC AACACGATTC AAGTGCTATG TCTTCCAAAA CTGAAGCTTC
CGGGAGCAGC AGCTGGGCCC TGCAGTGAGG ACCTTTAGCT GGGTGTGTTG GGTGAGCCCA
CAGGATCGCT TTCTCCCGCT TGGCTGTACA GCGTCTCTCC CCTTGTGTTT TGGCAGTGCA
M
GGCTGAAGAA CAACAACAGA CAAGTGTGCA TTGACCCGAA ATTAAAGTGG ATCCAAGAGT
ACCTGGAGAA AGCTTTAAAC AAGTAAGCAC AACAGCCCAA AGGACTTTCC AGTAGACCCC
CGAGGAAGGC TGACATCCGT GGGAGATGCA AGGGCAGTGG TGGGGAGGAG GGCCTGAACC
CTGGCCAGGA TGGCCGGCGG                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369791580 MGP_WTSI_6_117123514 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219990823 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369791580 MGP_WTSI_6_117123514 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:117150457 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cxcl12 C-X-C motif chemokine ligand 12 Coding-Synonymous
Rr637288 regulatory region 637288 828 bp distal
Rr637289 regulatory region 637289 370 bp proximal
Rr637290 regulatory region 637290 555 bp proximal
Rr637291 regulatory region 637291 606 bp proximal
Tssr58393 transcription start site region 58393 1990 bp downstream
Tssr58394 transcription start site region 58394 1950 bp downstream
Tssr58395 transcription start site region 58395 within coordinates
Tssr58396 transcription start site region 58396 12 bp upstream
Tssr58397 transcription start site region 58397 50 bp upstream
Tssr58398 transcription start site region 58398 76 bp upstream
Tssr58399 transcription start site region 58399 98 bp upstream
Tssr58400 transcription start site region 58400 126 bp upstream
Tssr58401 transcription start site region 58401 162 bp upstream
Tssr58402 transcription start site region 58402 193 bp upstream
Tssr58403 transcription start site region 58403 211 bp upstream
Tssr58404 transcription start site region 58404 230 bp upstream
Tssr58405 transcription start site region 58405 272 bp upstream
Tssr58406 transcription start site region 58406 302 bp upstream
Tssr58407 transcription start site region 58407 333 bp upstream
Tssr58408 transcription start site region 58408 400 bp upstream
Tssr58409 transcription start site region 58409 422 bp upstream
Tssr58410 transcription start site region 58410 444 bp upstream
Tssr58411 transcription start site region 58411 460 bp upstream
Tssr58412 transcription start site region 58412 487 bp upstream
Tssr58413 transcription start site region 58413 500 bp upstream
Tssr58414 transcription start site region 58414 533 bp upstream
Tssr58415 transcription start site region 58415 548 bp upstream
Tssr58416 transcription start site region 58416 563 bp upstream
Tssr58417 transcription start site region 58417 617 bp upstream
Tssr58418 transcription start site region 58418 650 bp upstream
Tssr58419 transcription start site region 58419 669 bp upstream
Tssr58420 transcription start site region 58420 696 bp upstream
Tssr58421 transcription start site region 58421 715 bp upstream
Tssr58422 transcription start site region 58422 741 bp upstream
Tssr58423 transcription start site region 58423 749 bp upstream
Tssr58424 transcription start site region 58424 811 bp upstream
Tssr58425 transcription start site region 58425 856 bp upstream
Tssr58426 transcription start site region 58426 878 bp upstream
Tssr58427 transcription start site region 58427 905 bp upstream
Tssr58428 transcription start site region 58428 920 bp upstream
Tssr58429 transcription start site region 58429 985 bp upstream
Tssr58430 transcription start site region 58430 1030 bp upstream
Tssr58431 transcription start site region 58431 1126 bp upstream
Tssr58432 transcription start site region 58432 1199 bp upstream
Tssr58433 transcription start site region 58433 1235 bp upstream
Tssr58434 transcription start site region 58434 1673 bp upstream
Tssr62617 transcription start site region 62617 60 bp downstream
Tssr62618 transcription start site region 62618 82 bp downstream
Tssr62619 transcription start site region 62619 118 bp downstream
Tssr62620 transcription start site region 62620 161 bp downstream
Tssr62621 transcription start site region 62621 227 bp downstream
Tssr62622 transcription start site region 62622 779 bp downstream
Tssr62623 transcription start site region 62623 797 bp downstream
Tssr62624 transcription start site region 62624 912 bp downstream
Tssr62625 transcription start site region 62625 1063 bp downstream
Tssr62626 transcription start site region 62626 1159 bp downstream
Tssr62627 transcription start site region 62627 1190 bp downstream
Tssr62628 transcription start site region 62628 1325 bp downstream
Tssr62629 transcription start site region 62629 1505 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory