rs219989152 SNP Detail

Summary

• ID
  rs219989152
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13667251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAAAAG AATAAACTCA
  GAGAAATATC AATAATAACT TGTTTAACTA CAGTTGTAAA ATCAACTTAA TCATATGATT
  TATCTTCCAA AATTCTAGAA CAAAGTTCAC AATACCATGT CTTCTACTTC TACTTTTATA
  TTTTCTTTAT ATTTATATTT CTAAATACCC ATTAAAAAGC AACAAAACAA AACTAACTTA
  M
  AGTTTTAAAC ATGAGTAATG ACAACATTCC AAATCAAGTT CAATACAGAA ATCGATGAGC
  CAATTATTCT CAACCTGTGT CCTATAGCAA GATAACAGTT TTCAAGTAAA CAAGTAAACT
  CATCTTTACA TGCAAAACAT TTGTTTCAAC TAAAGAACAG AAAAGCCTGA CAGCCTATTT
  TTAAAAATAA TGGCTACTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321748470	CHEV_6_13617252	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219989152					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13667251 () rs orientation: forward

Symbol	Name	Function Class
Rr626579	regulatory region 626579	1227 bp distal
Samtor	S-adenosylmethionine sensor upstream of mTORC1	Intron