rs219965815 SNP Detail

Summary

• ID
  rs219965815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GAGAGATCTC GGGGGGGTGG
  K
  GGGGGGGTGG GGTGGGGGAG GTCCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NZO/HlLtJ	PL/J	RIIIS/J	SJL/J	ST/bJ
ss915080821	MGP_WTSI_1_156750202	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	G	G	T	T	T	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NZO/HlLtJ	PL/J	RIIIS/J	SJL/J	ST/bJ
rs219965815					SNP	G	G	T	G	G	G	G	T	T	T	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915080821	MGP_WTSI_1_156750202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	1520 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	1237 bp distal
Rr421243	regulatory region 421243	435 bp distal
Rr421244	regulatory region 421244	within coordinates
Rr421245	regulatory region 421245	1556 bp proximal