rs219963752 SNP Detail

Summary

• ID
  rs219963752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78522462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAGGACCC AACCATTTTC CCAAGCAGTT
  GCTTCTGAGT TCCAAGTGGC ATCACGTAAC TTTTTACTTG TGCCAGAccc cccccccccc
  catgttcccc tttccttctc tccctcctct tcctctcccG CCTTTCTTTA AATAAAAACT
  R
  GGTGCTGGGG TCACATTCAG GGGTAGGCAC CCTTTTTTAA ATTAGAGAAA CCGTAACATT
  TTCTTAGGGA GTTAAGTAAA CATCAACTTT TATCTTAAAA AAAAAAGTCC CCCCCCCCGC
  TTTTTCATAC ATATACAGAA ACTACCAATA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323016774	CHEV_9_78462987	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219963752					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78522462 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	366 bp upstream
Cpgi22073	CpG island 22073	315 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	584 bp distal
Rr683598	regulatory region 683598	103 bp proximal
Rr683599	regulatory region 683599	464 bp proximal
Tssr86295	transcription start site region 86295	272 bp upstream
Tssr86296	transcription start site region 86296	302 bp upstream
Tssr86297	transcription start site region 86297	321 bp upstream
Tssr86298	transcription start site region 86298	558 bp upstream
Tssr86299	transcription start site region 86299	577 bp upstream
Tssr86300	transcription start site region 86300	624 bp upstream
Tssr86301	transcription start site region 86301	641 bp upstream
Tssr86302	transcription start site region 86302	657 bp upstream
Tssr90659	transcription start site region 90659	465 bp downstream