rs219951626 SNP Detail

Summary

• ID
  rs219951626
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54505308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAAAGATG GAGATCTTAG CACAGGCTGA
  TGTTTCTCCA GGAGCAGCCT AGGGCACGGC ACATGTCCTG CAGATGGCCC TCCCACCTCC
  ACCCTGCATT TTAACTTACT TTTCTGTAGA CTGACTTCAT TCCAGCATAA ATTTCTGGGA
  K
  TCGGGGGGGG GGGGCGGTAA AAAACAATAT ATTTTTCCTT TCGTCCTCAG AGCCAAGCAC
  ATGATTAATT AATGTTTGTG GAAAACTTGA GTAAGGGATT AGTGGAGGAC TGGCCTCTGT
  GCTCAAAAGA GACTCAGTCT GGAGCCAGGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772139	CHEV_3_54401809	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219951626					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54505308 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	5 bp proximal