rs219948515 SNP Detail

Summary

• ID
  rs219948515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154610597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTTCCGG GCATTGGCCT GGGGGCAGCT
  ATCACTAAGC ACCCTTTCGA AAGGCAGAGG TCAGGTCACC ACCACAGGAC AAAGCTCTCT
  GCAAAAACAG AGACACACAT GCACACAATG CACTCACACC ACATGCATAA GCGCACACca
  Y
  acacacacac acacacacac acacacacac acacacacac acatgtgccc ttacacacac
  atgcactcac acagtacaga ccacacacac aagcacatgc acacacacac acacacacgc
  acacgtgccc ttacacacac tcgcgcacac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321439208	CHEV_4_153900249	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219948515					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154610597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606198	regulatory region 606198			within coordinates
Rr606199	regulatory region 606199			1198 bp proximal