rs219942028 SNP Detail

Summary

• ID
  rs219942028
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147899053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGCGGT TAAGAGCACT
  GACTGCTCTT CCAAAGGTCA TGAGTTCAAA TCCCAGCAAC CATATGGTGG CTCACAACCA
  TCTGTAACAA GATCTGAAGC CCTTTCTGGA GTGTCTGAAG TCAGCTACAG TGTACTTACA
  TATAATAAAT AAAGAAAAGA AAAAGAAAAG AAAATTACCC ATTCTTAAAA AAAAAAAAAA
  W
  TACTGAAAAC TCAGTAGGAA AAACAAGACA GATTTCTGTT CAGCTCCTCA GAGGCTAAGG
  CAGAAAGCTG TAGCAGTATA AAAAAAAAAC CAAAACCAAA ACCAAAACAA AACAAAACAA
  CAACAAAAAA AAAGAGGACT GCAGTGTCCT AAACTGAACA GCAGATGGAG ACAAATGTAC
  AAAGGGTTCC AAATTAGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	DBA/1J	FVB/NJ	I/LnJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J
ss363601630	MGP_WTSI_4_147188705	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	A	A	A	A	A	T	A	T	A	A	A	A	T	T	A	A	A	A	T	A	A	T	A	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	DBA/1J	FVB/NJ	I/LnJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J
rs219942028					SNP	T	T	A	A	A	A	A	T	A	T	A	A	A	A	T	T	A	A	A	A	T	A	A	T	A	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363601630	MGP_WTSI_4_147188705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147899053 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	1089 bp downstream
Rr398848	regulatory region 398848	within coordinates
Rr604504	regulatory region 604504	8 bp proximal
Rr604505	regulatory region 604505	154 bp proximal
Tssr44549	transcription start site region 44549	75 bp downstream