rs219941129 SNP Detail

Summary

• ID
  rs219941129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76870082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCCCTGT CTTCACGATG TTGGTCGGAA
  CCTCAGGGGG CTAGAAGATG TTTGTGGGCC TTCTCTCAGT GGAGAGGATA GACTAAATCC
  TTAGACTTGC TTGCCTGACT GTTAAGAAGT AGCCTCCTCC CAGTGAGACT CAAGGACTCC
  R
  GGAGCTGCTC AGATGGACTC AGCAGGGCAC AGAGCCTCTG ACTTTGCAGA GCCTGACACA
  TTCTCCGGGC TAGGGAGCCG GATGTGTGCC TTCCAACAAG GCACTGGGGC TGAGGAAAGA
  GATTGATTCT GGGCATTTGA GCCAGTGGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323363334	CHEV_10_76496993	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219941129					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76870082 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			422 bp distal
Rr434376	regulatory region 434376			1554 bp distal
Rr434377	regulatory region 434377			1574 bp distal
Rr434378	regulatory region 434378			970 bp distal
Rr434379	regulatory region 434379			1231 bp distal
Rr434380	regulatory region 434380			1084 bp distal
Rr434381	regulatory region 434381			within coordinates
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				Noncoding-Transcript-Variant
Tssr94203	transcription start site region 94203			1993 bp downstream
Tssr94204	transcription start site region 94204			1971 bp downstream
Tssr94205	transcription start site region 94205			1501 bp downstream
Tssr94206	transcription start site region 94206			990 bp downstream
Tssr94207	transcription start site region 94207			964 bp downstream
Tssr94208	transcription start site region 94208			947 bp downstream
Tssr94209	transcription start site region 94209			933 bp downstream
Tssr94210	transcription start site region 94210			1581 bp upstream