rs219907099 SNP Detail

Summary

• ID
  rs219907099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116504905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCACAGC CACACACAGT
  GAAGAGGGGG CAGGAGTGGG GGTGTGTGGG TGGATGAAGA GAACCAGGAG ATAGTGAGAC
  AGAGAAGAGA GGGGGCCCTG CTCATGCGTG TGCTATCAGG TCAGGCGTAG TTCCAAGGCA
  GAAAGACTTA AAGCTGCAAG TTCCGTTTTG GAAGCTATTG GTATGGTGCA CCTGAAAGTG
  R
  CCAGAAAATA AGGGCAGATG CGGTAGGAAA AAATTTAAAG GGAGGGAAGT TAGTCAGACG
  CATAAACGTA GGAGTCATTC ATTTGAAAGC AAGCAACTTG AGTTAGTAGC AACGGAATGA
  AGACGTGAGA AACAACCAAA CATTACCTGT AACTACCAAA ATAAGTGTCT ACAAAGACTC
  AACTCAGGTG CCATCTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359359682	MGP_WTSI_3_116414174	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219907099					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359359682	MGP_WTSI_3_116414174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116504905 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13739	CpG island 13739			380 bp proximal
Gm54181	predicted gene, 54181			529 bp upstream
Gm64822	predicted gene, 64822			1070 bp upstream
Rr583764	regulatory region 583764			within coordinates
Rr583765	regulatory region 583765			190 bp proximal
Rr583766	regulatory region 583766			965 bp proximal
Rr583767	regulatory region 583767			1162 bp proximal
Rr583768	regulatory region 583768			1384 bp proximal
Slc35a3	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3			Intron
				Noncoding-Transcript-Variant
Tssr35331	transcription start site region 35331			519 bp downstream
Tssr35332	transcription start site region 35332			564 bp downstream
Tssr35333	transcription start site region 35333			593 bp downstream
Tssr35334	transcription start site region 35334			610 bp downstream
Tssr35335	transcription start site region 35335			942 bp downstream
Tssr35336	transcription start site region 35336			985 bp downstream
Tssr35337	transcription start site region 35337			1204 bp downstream
Tssr35338	transcription start site region 35338			1388 bp downstream
Tssr35339	transcription start site region 35339			1440 bp downstream