rs219892358 SNP Detail

Summary

• ID
  rs219892358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108703910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGAAAAGA GAATTGAAAT
  ACTGAAAAGT GAAATTACTT CCCAGTCTTT TTTTTTTTTT AAAGATTTAT TTATTATATG
  TAAGTACACT GTAGCTGTCT TCAGACACTC CAGAAGAGGG AGTCAGATCT CGTTACGGAT
  GGTTGTGAGC CACCATGTGG TTGCTGGGAT TTGAACTCCG GACCTTCGGA AGAGCAGTCG
  R
  GTGCTCTTAC CCACTGAGCC ATCTCACCAG CCCCACTTCC CAGTCTTTAA ACAACCATTA
  AGTGGACTTT CATGTGTCTC CTGTACTGTA TTAGAGACTT ACTCTACTCC AGCATGTGTG
  TCCTATATTA TATCATACTC CTGTCACACA CATACTCACA TTTATACTTC TGTACCTATC
  ACACTTGTGC TTGCTGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss362790245	MGP_WTSI_4_108519318	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs219892358					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362790245	MGP_WTSI_4_108519318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108703910 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	686 bp downstream
Cpgi14566	CpG island 14566	1031 bp proximal
Kti12	KTI12 homolog, chromatin associated	1144 bp upstream
Rr398384	regulatory region 398384	956 bp upstream
Rr597229	regulatory region 597229	257 bp distal
Rr597230	regulatory region 597230	768 bp proximal
Tssr38317	transcription start site region 38317	1114 bp upstream
Tssr38318	transcription start site region 38318	1184 bp upstream
Tssr42741	transcription start site region 42741	1643 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron