rs219886613 SNP Detail

Summary

• ID
  rs219886613
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109286531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGTTCCTGA CTTCTAGCTC TACAACCTTG
  ATTCTCTTTC TTTGAATTTT TTGTCTCATT TTGAAGTCTC ACTTGGGGAT CAAACCAAAC
  CATGGCTCAT TGTGATTTTT GTGATGGTTT GAATGTTAAG AGATTATTTT TACACACGTA
  K
  AGCAATGAAT GCTCTATAGA TTTCTGTGTA AGTTATTCTA CTATTTGTGT GTTTACATGC
  AAATATAGTA AAATATGCCT GCAATATTTT GTAATATTTA GAGGAAATTA TACAACACGT
  GTACGTTCTT CTCTGCCTCC CTAACCATTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868598	CHEV_3_109182133	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219886613					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109286531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			151 bp distal
Tssr31292	transcription start site region 31292			1456 bp upstream
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant