rs219869437 SNP Detail

Summary

• ID
  rs219869437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119453066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGGAACT CAATTTGTAG ATTAGCCTAG CCTCAAATTT
  ACAGAGATGG GTTTACTCTT ATCCTCTGAG TGCTGGGACT AAAGGCATGC ATGCATCATT
  K
  TCCCAGCTTT AAGCAAGTGT ATTTATGTAT ATAAAGGTCT TTGTCTACGA TTGTGCCTGC
  AGACCAAAGA GAGCATCAGA CTGAGCTGCC ATGTGGCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320476362	CHEV_2_119448321	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219869437					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119453066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr563553	regulatory region 563553			1943 bp distal
Rr563554	regulatory region 563554			1634 bp distal