rs219864981 SNP Detail

Summary

• ID
  rs219864981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9070752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAAATA AAGAAAACAC
  CCCTTATCCC TTATCCCTTG AAGAGTTTAC ATACTTGTTT ACATGTGTAA CTTTTCTCAT
  TTTCCTTCCT GTTCAGGAAC CCGTGTTGCA CAATTGAAAC ACTGCTGGGG CAGATCCCCA
  TAGCTCCCCA GGCAGGAGCA AAGTTTGCTG GCTGGGCCTC AAAGAAACTA TTTAAGGAAG
  Y
  AGAAGAAGGG GAGCCCAAGT TTGGAGCCAG CCTAGGCTAC CAGTGAGGGG AGGGAGGAGG
  AGAGAGGGAG GGAAGGAGAA AGAGGAAGAG GTGGGGGAGA AAGGCCGTTA GTTTCCCTTT
  GCCTTTGCAC TGACCGGAGC AGTGGACATG GTGCAAATAT GAGGAGGAAA GGTCAAGAAT
  GGTTGACATG GACAAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356913831	MGP_WTSI_3_9005692	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219864981					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356913831	MGP_WTSI_3_9005692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9070752 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12969	CpG island 12969	821 bp distal
Rr374475	regulatory region 374475	966 bp downstream
Rr573366	regulatory region 573366	1264 bp distal
Rr573367	regulatory region 573367	479 bp distal
Rr573368	regulatory region 573368	within coordinates
Rr573369	regulatory region 573369	1110 bp proximal
Tpd52	tumor protein D52	928 bp upstream
Tssr32570	transcription start site region 32570	1836 bp upstream
Tssr32571	transcription start site region 32571	1264 bp upstream
Tssr32572	transcription start site region 32572	1225 bp upstream
Tssr32573	transcription start site region 32573	1177 bp upstream
Tssr32574	transcription start site region 32574	1057 bp upstream
Tssr32575	transcription start site region 32575	942 bp upstream
Tssr32576	transcription start site region 32576	921 bp upstream