rs219856344 SNP Detail

Summary

• ID
  rs219856344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113309256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGTACATT ATGTGCACTG CTGTTTGTAT
  GTAGAAGTTT TCAGAGGGAA GAGGCGGAAA GTTAATACTG GTTACCTTTG GGGAGACAGA
  TGGAAAGATG TTTCTATTTT ACcttctctt ctcttctctt ctcttctctt ctcttctctt
  M
  tcttctcttc tcttctcttt tcATTACATG TGCTTACAGA ATGTTTTGTT GATGTCAATA
  GATCTATCAG ACTATTAGaa tttataattt atctttattt tttataCTCC TCTGTGTCTT
  TTTTTCTTTT ATTTTTTGTT GTTGTTGTTG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910522	CHEV_6_113282289	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219856344					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113309256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk1	calcium/calmodulin-dependent protein kinase I			1829 bp downstream
Ogg1	8-oxoguanine DNA-glycosylase 1			Intron
				Noncoding-Transcript-Variant
Rr636491	regulatory region 636491			1357 bp distal
Rr636492	regulatory region 636492			586 bp proximal
Tssr58198	transcription start site region 58198			1009 bp upstream