rs219802398 SNP Detail

Summary

• ID
  rs219802398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113303922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTACCTCT AGGGTCAAAT AAGCGGGAGC
  AAGGATCTAC TTCCGGTGGG AGTAAACTGG GACCCGGAAG AACCATACTG GCGCGCCTTT
  CCAAACCTCG AGGGCTGCGC AGGAGGAGGA GGCGCGCGCC GGGAGGTCCT GGGGGCGGGG
  Y
  CACGTCCGGA GGAAGAGGCG GGGCGTGCTG CACGGGAGAG CGGAGTGGGG CGTTTAGGGG
  TTTGGTGGTG TGCGAGAGGC TTTCCTACGA GGAGAGGGAA ATTCATTCAA CAGGGACTCA
  AATTAAAATT ACACCGGACC CATAAGCTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910505	CHEV_6_113276955	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219802398					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113303922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17839	CpG island 17839	within coordinates
Gm15492	predicted gene 15492	141 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1	37 bp upstream
Rr399830	regulatory region 399830	75 bp downstream
Rr636489	regulatory region 636489	240 bp distal
Rr636490	regulatory region 636490	within coordinates
Tssr58194	transcription start site region 58194	29 bp upstream
Tssr58195	transcription start site region 58195	58 bp upstream
Tssr58196	transcription start site region 58196	264 bp upstream
Tssr58197	transcription start site region 58197	282 bp upstream
Tssr62435	transcription start site region 62435	276 bp upstream
Tssr62436	transcription start site region 62436	211 bp upstream