rs219799045 SNP Detail

Summary

• ID
  rs219799045
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110049582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTTCTTC TCTCCCCAGC
  TTCCCGATGT GTGGTAGTAA CGCTTTAATC TCGCACCAAT AAAGGAGATT AAAAGAGGGA
  CTTCAAAGCT CTCCACAGGG CGAGCAACAA GGCAAGTTTT TATTTATTTT TTCCCCAGAT
  GAGAAAACTG GTAAAAGAAA ATTTAAATTA AAAAAAAAAA GAAAGAAAAA AAGAAAAAGA
  M
  AAAGCTTGTG CGATGCGTGT GGTCAGGTGT GTGTGGGAGA CAGAGCGCTG CGCGTTGCGG
  GTGGGTGGAT GGAGGCTCAG GATGCAACAG CCTGCGACCC GGTGCTGGGC GCAAGCCTGG
  GATGTAGTGT GGGTGTGAGC GGTGCGAGTT CTGGAGTGCG CACAGGCTCC GCTCTACCTC
  CTTAAGGCGC TTTCCAAAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359205324	MGP_WTSI_3_109945184	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219799045					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359205324	MGP_WTSI_3_109945184	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110049582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			within coordinates
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			within coordinates
Rr583464	regulatory region 583464			417 bp distal
Rr583465	regulatory region 583465			222 bp distal
Rr583466	regulatory region 583466			667 bp proximal
Rr583467	regulatory region 583467			728 bp proximal
Rr583468	regulatory region 583468			1735 bp proximal
Tssr1022	transcription start site region 1022			1140 bp upstream
Tssr35233	transcription start site region 35233			478 bp downstream
Tssr35234	transcription start site region 35234			730 bp downstream
Tssr35235	transcription start site region 35235			1247 bp downstream
Tssr35236	transcription start site region 35236			1296 bp downstream
Tssr35237	transcription start site region 35237			1414 bp downstream
Tssr35238	transcription start site region 35238			1432 bp downstream
Tssr35239	transcription start site region 35239			1520 bp downstream
Tssr35240	transcription start site region 35240			1671 bp downstream