rs219780143 SNP Detail

Summary

• ID
  rs219780143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13150739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGAGCA ATTAGACAAC
  AAAAGTCAAA GGGATACAAA TTACAAAGGT TAAGTCAAAA TATCACTATT TGCAGATGAT
  AAGATAGTAT ACTTAAGTGA CCCAAAAAAT TCCAACAGAG AATTCCTAAA CCTGATAAAT
  AACTTCAGCA AAGTGACTGG ATATAAAATT AACTCAAACA AATCAGTAGT CTTCCTCTAC
  K
  CCAAGGATAA AGGGGTTAAG AAAGAAATTA GGGAAATGAT TCCCATCACA ATAGTCATAA
  ATACTATAAA ATACTTTGGT GTGACTCTAA CCAAGCAAGT GAAAGTTCTG TCTGACAAGA
  ACTTTAAGTC TCTGAAGAAA GATATCGAAG ATCTCAGAAG ATGGAAAGAT CTCCCATGCT
  CACAGATTGG CAGGATTAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321747159	CHEV_6_13100740	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219780143					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13150739 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	1460 bp proximal
Rr626557	regulatory region 626557	1705 bp proximal