rs219767225 SNP Detail

Summary

• ID
  rs219767225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130860092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTCCTC ATTCGGGTAT
  GTTCTGCCTG CAGCCACTTC AGCACCCCAC GCCTTTCAAG CATGTTTAAT GGGAAAGGTG
  AGGGTTTTCT ACAGCTAATT ACTTAATAGG TAACAAAGCA TAGCTCTGCC AGGGAGGGCT
  CCAGATCCTT CCAGCGGCTG CGAGGCCACT CCCCTCCCAG CCCGGCCCCC TCCCCCGCCC
  Y
  CGTATGAGTG TCAGAAGGAG AGCCATATAC TTTGTCTCTT TTATTCACAC ACCAAAAGAC
  CAGGTTTTCT TAGATTCCTT GGGAATTTCA GAAGATTAAC TTTTAGATAG GAAACTTCAT
  AAGCTGAGCA GGCTGAGGGG GGAAAAAATC ATGTCTCCCT CCAGCAGTTC CAGCAAGGGA
  TGAAATTTTA AGTCGCATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359730421	MGP_WTSI_3_130769361	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219767225					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359730421	MGP_WTSI_3_130769361	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130860092 () rs orientation: forward

Symbol	Name	Function Class
Gm65588	predicted gene, 65588	1953 bp upstream
Rr585259	regulatory region 585259	959 bp distal
Rr585260	regulatory region 585260	1280 bp distal
Rr585261	regulatory region 585261	1217 bp distal