rs219763226 SNP Detail

Summary

• ID
  rs219763226
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152062769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAGGGC CCATCCCACT
  GAAGCTGGGG CTGTGACTCC AGACAGCCCA GGGGCTCTGC TTCACCGACA ACCTCGTTCC
  CTCCTGAACT GCTGTGTCTG GAGTCTGCAG TCTGTGCCCT GAGTCCCAGC ACGGCTCTGT
  AGCGTGGCAC ACACCGCCCT GCTCTCCTCC TTTTTGTGAG AGCAAAGGAG CAGAAGGCCA
  C
  GCTTAGGAGC AGGGTGCCAT GGGGTTCTCG TGACACAGGT GAGGGACCAT TTGAGCCCAC
  ATATGTTCCT AGGCAGATGT GCCCGTTTGT GGGGCAGCAC ACAGCCCTAC ACAGCTGAAC
  GGCTTCACAA ACAATACTGG TCCTCTTCAA GAAAAGTAGG AGGTCCAGCT GCTCACGTCA
  AGTGTCTGTT TTGAGGCAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433792	CHEV_4_151352421	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219763226					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152062769 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc11	DnaJ heat shock protein family (Hsp40) member C11			Intron
				mRNA-UTR
Rr605686	regulatory region 605686			377 bp distal
Rr605687	regulatory region 605687			347 bp proximal
Rr605688	regulatory region 605688			534 bp proximal