rs219740816 SNP Detail

Summary

• ID
  rs219740816
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152369070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTTTCGT GTCTCAGTGC CCATCTCCAG
  TTTTGCCTCC CACAGGCAAA GTCCTTGGAA AGGGTGTCCT GTACCCCACT TCCCCTGCAA
  GAAGGGCTTT GCTCTCTCCT GGGTCTGGGC TGTGCCAGGG ACATGGGTAT TCCCAGGAGA
  A
  TCTGGGAGCT GGGAGCAGAG GGGGAGAGCT GTCACCAGAC AGCGGACCCT CTGTGTTGGG
  ACCTGGAGAT AGTCTTAAGG CCAGCACAGA ACCAGCCTGT GTCTCCTTGT TCTTGAGACG
  TGGTGGACAG GCCTGTCTCC TCTCCCTCTG                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434064	CHEV_4_151658722	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219740816					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152369070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15403	CpG island 15403			541 bp distal
Cpgi15404	CpG island 15404			1485 bp proximal
Gpr153	G protein-coupled receptor 153			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Hes3	hes family bHLH transcription factor 3			1359 bp downstream
Rr605825	regulatory region 605825			1218 bp distal
Rr605826	regulatory region 605826			602 bp distal
Rr605827	regulatory region 605827			1082 bp proximal