rs219733141 SNP Detail

Summary

• ID
  rs219733141
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120018410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCAGTG TGTTGATTCA
  TGCTTCTCTC TTCCCATTGA TAACTTACAG GCAATAAAAG TCGGCAACAG CTTTAAGGTA
  GACAGTGGCT GAAATGAACT GAACACATAC TTGATCTAGA GTATGGTACA GTTCCCGGTA
  GCTTCCTGGA TGTGGCTTAT GGAGGGCCTC TTTCCCTTTT TTTTTTTTTT TTTCTTTTTT
  C
  TTTTTTTTCC CTCCTTTTCC ATGTTCCTTT GACTTGCGTG TGAATGAGTT TTGTTTCATT
  CCTGTCATTC CCAACTGTGC TTGGCCTTCT TTTAAGCTCT CGCTTGTGTT TACTGTTTTA
  CAAAAGCTCA CTATGTACAG GTTGAATGCT GGATAGTATG GATCTCAACT TCAAGTATGA
  ATGTCAGTCA AGAAACCCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss369858112	MGP_WTSI_6_119991467	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs219733141					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369858112	MGP_WTSI_6_119991467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120018410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17917	CpG island 17917	1416 bp distal
Gm66353	predicted gene, 66353	119 bp downstream
Rr399864	regulatory region 399864	1544 bp downstream
Rr637761	regulatory region 637761	1220 bp distal
Rr637762	regulatory region 637762	1643 bp distal
Rr637763	regulatory region 637763	1282 bp proximal
Tssr58518	transcription start site region 58518	1523 bp downstream