rs219696427 SNP Detail

Summary

• ID
  rs219696427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135013380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGTGA GAAGACACTG
  AGAGTCCTGG AATTTGCGTC GGATTACAGA ATTTAGGAGA TTCAGGAACA GTGAGAGAGC
  CTGCTGCTCT TAGCCTTGAG AGGTGGCCAG AGGCTGCTGG AAGCTGGGGC GCGTGGGCCA
  GGGTCTCCCT CTGGCTGAAT GAGCAGAGCC CTGAACTGAG AGTGTGCCCC GCCCTGCCCC
  K
  CCCTGCCCCG CCCCTCCCTA CCCCGCCCCG CGCCACTGGA CCTCCCTGTT TTCCGCCGGC
  CCCCAGCCAC AGCACCGCCC TAACCTAGCA CGCCTTGGTA AACCTAGGCT CAACTCCCAC
  TCAACGGAAG CCAGGAGGCC TGCGCAGACT GCCAGCAATG AGGTGAGTAG CACCGAGCAA
  ACAACCCATG CGCATAGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss359831282	MGP_WTSI_3_134970583	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs219696427					SNP	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359831282	MGP_WTSI_3_134970583	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135013380 () rs orientation: forward

Symbol	Name	Function Class
Gm46826	predicted gene, 46826	within coordinates
Rr585684	regulatory region 585684	within coordinates
Rr585685	regulatory region 585685	137 bp proximal
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	mRNA-UTR
Tssr31804	transcription start site region 31804	62 bp upstream
Tssr31805	transcription start site region 31805	92 bp upstream