rs219690260 SNP Detail

Summary

• ID
  rs219690260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95785365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGACAGT TACCCAGTCC AGATGCCAGA
  GCCAAGCAGT GTGTCCTCTT TGGTTACAGA CAGCAATGGG GTTTGCTGGA GTGAGACAGA
  AAGGCATTCT CCCACGCAGG AATCTTCCTG AAAATTGCTC ATGACAGTTT CTTTGCTCCT
  Y
  CAGCATATCA TGTACAGGAG GGATTTCAGG TTGGAAAAAT GGCCAACCAT AGAACAGCTA
  TAGAGTCTAT CCCTACATGA TTCCTTTAAG GATATAAAAg gcttgatgtc ctatttctcc
  tcttattaga caggggaagt gagagagacc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321216051	CHEV_4_95563819	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219690260					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95785365 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			1589 bp distal
Rr595486	regulatory region 595486			89 bp distal
Rr595487	regulatory region 595487			180 bp proximal
Rr595488	regulatory region 595488			203 bp proximal
Rr595489	regulatory region 595489			336 bp proximal