rs219685097 SNP Detail

Summary

• ID
  rs219685097
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106715923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAAGCC TCCTCCCACT
  CAGCCACCTC GTGGACTATC ACACTGCCAC GTGTGCCAGC CCTCAGCTGC CCCGAGAGCT
  GTCACTGTGG AAACAAGGAG AGTGTAGTAG ATTGCTGTCT GTACTCCCCG CATTCAAGAA
  GGCAAGGCAG AGCTGGGTGT GGTGGCGCAC TCCTTTAATC CCAGCACTTG GGAGGCAGAG
  S
  CAGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG
  GGCTATACAG AGAAACCCTG TCTCAAAAAA CCAAAAAAAA AAAAAAAGAA GAAGAAGAAG
  GTGAGGCAGG AGGTGAGGAC ATCCTTGAGA CTTTGCCTAA ATAAATAAAA ATATTTGGGC
  TGAAGAGATG GCTCAGTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746644	MGP_WTSI_4_106531331	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	C	C	G	C	C	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	C	G	C	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219685097					SNP	G	G	G	G	G	G	C	C	G	C	C	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	C	G	C	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746644	MGP_WTSI_4_106531331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106715923 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	208 bp upstream
Gm69780	predicted gene, 69780	545 bp downstream
Gm70282	predicted gene, 70282	1115 bp upstream
Rr376973	regulatory region 376973	272 bp upstream
Rr596849	regulatory region 596849	876 bp proximal
Rr596850	regulatory region 596850	1126 bp proximal
Tssr38192	transcription start site region 38192	995 bp upstream
Tssr42651	transcription start site region 42651	651 bp downstream
Tssr42652	transcription start site region 42652	861 bp downstream
Tssr42653	transcription start site region 42653	872 bp downstream