rs219654336 SNP Detail

Summary

• ID
  rs219654336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151811391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCTTCCC CAGTCTCCCA
  AGCCGCGTGC ACCTTCCCCA AGCCAGTGGC TGTTTCATAA TGCACCTCCC ACTTGTGCCG
  ACTCTGCCGC TTCTAGAGGG AACTGCTGGC TGCTTTCTTG TCTTCCCTTG TCCCTGACAG
  CCTCTTCATC GTGACACTGT GTGTCCCGAA CTGTTCATCA GTTCCTAATG GCTTCTGTCT
  Y
  TCTTTAAGAG AGGAAAAGGG CCGTTATTCA TCCTTGAATC ACTAGTGCCC AGACTGCCAG
  GCTCAGCAAA GGCAACGAAT AAATAAACGA GGCCTGGGAG TGCAGCATCA TGGTCAGCTT
  CCCGCATTTG TGCCAGGTCA GAAGGGAGAT TGTTTCAAAT CCTGTTAGTT CTTTAAATCC
  TTCAGAAACT TGATTGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028042	CHEV_3_151768718	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219654336					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151811391 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			37 bp distal
Cpgi13940	CpG island 13940			776 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			162 bp distal
Rr587453	regulatory region 587453			206 bp distal
Rr587454	regulatory region 587454			within coordinates
Tssr36159	transcription start site region 36159			1443 bp downstream