rs219639392 SNP Detail

Summary

• ID
  rs219639392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101260211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTTTCG ATATAAGTAC
  TGCTATATGT TTTTCAAAAC TAACCTTTCT GTCCCCTCAA CTCCTACCCT TGGTCTTAAG
  GGATCTGAAA TAAAGTTTCT CATTTTTCTA TTGCAGGAAA AGTCTGTCTA TATAATAAAA
  ATCGTCTTTT GGGGTGGGTT ACTGTCTCAG AGACTCCTAT GCCATTCCTT GGGCTGGGCT
  Y
  AAGGTTCCTG CTGCTTTGGA GTTTCTGAGT CTCTTGGGGG TCCAGATGAA ATAAAAAAAT
  CAAAGAACTG ACGTTTCCTC TGGAGACAAT CGCAGGTGAA TTTCTGTTCT TCGGCCTTCT
  GTCAGATGTC TCCTATCTGT GACACTTCAG TCAGATGTCT ATTGCTTTCT GCAACATTGG
  TGGGTTTCCT TCTTCAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229914	CHEV_4_101075619	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219639392					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101260211 () rs orientation: forward

Symbol	Name	Function Class
Gm12798	predicted gene 12798	67 bp upstream
Rr596143	regulatory region 596143	1833 bp proximal