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rs219566484 SNP Detail
Summary
  • ID
    rs219566484
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:19363530 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTAGTCTAGG GGTGGGCAAA
    GAAAACTGAA GCTTAAATTG TTTTTTGTGT GGTAATTAAG ATACTAGGTA AAGCTCTTGG
    GGTCAGTTTT GTTTTCAATC CCTTGATCTT CCCTCTCAGG AAGCAGGGAC ATGTAACACA
    TATTTCATAA CTTTAGATAA AGTGTGCCTT ACTATTTATA TGTAAGTGAA AGTGGGTGTT
    Y
    GTCATGTCTG CTGATCTCAG GAAGAAAACA GTATTTAGAA ATGAAAGTTA CTTCCATTAA
    AGACCTTTAA TTACTATTAT TGAAAACCTT CTCCTGAGTG CTTTAATATA TTTTGATATT
    ATTCTGGAAC TTTAAAACGT GTTAAGCAAT AATAAAAAAT ACAGTTCACA AACTACACTT
    CAAAGTAACA AAAGTATTAT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357153097 MGP_WTSI_3_19209366 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219566484 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357153097 MGP_WTSI_3_19209366 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19363530 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene 1516 bp upstream
Cpgi13002 CpG island 13002 1078 bp proximal
Pde7a phosphodiesterase 7A Intron
Noncoding-Transcript-Variant
Rr573969 regulatory region 573969 525 bp proximal
Rr573970 regulatory region 573970 1946 bp proximal
Tssr28510 transcription start site region 28510 1326 bp upstream
Tssr28511 transcription start site region 28511 1482 bp upstream
Tssr32696 transcription start site region 32696 1877 bp downstream
Tssr32697 transcription start site region 32697 1903 bp downstream
Tssr32698 transcription start site region 32698 1967 bp downstream
Tssr32699 transcription start site region 32699 1983 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory