rs219548269 SNP Detail

Summary

• ID
  rs219548269
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143867901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGACAGA GGGAAAACTT
  CCCCCAGCCT TCTTGTCTGA GTCTACGCTG CTAAACACTC TGCTACATTG TCTCAATTAA
  TGGGTTCCTC TGAATTAATG AATTCCTCTG AAAACTTTGG CTCTCCCATA TAAAGATAGA
  TGGTCCCTGA TGTCCCAGCA CTATGAGAGA GGGGAGGTGG GGGGGGGGGG AGGGAGGAAG
  K
  GAAGAAAGGA GGGAGGGTGG GGGGAGTGTG AAACAATGGG AAGCTGTGGG TGATTAGTTC
  AAAATACAGC AAATCTAAAA ATACTCTGGC TTCACTTTGA GATATTTGTC CAACAAGAGT
  GGAACAACTT TAATTAGTGT AACAGGACAA TAGGAATTAA ATTGGCTCGG TCACAAGATT
  TTTAAGGGAT GACACTGACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss360061552	MGP_WTSI_3_143825104	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	T	T	T	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs219548269					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360061552	MGP_WTSI_3_143825104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143867901 () rs orientation: forward

Symbol	Name	Function Class
Gm34162	predicted gene, 34162	within coordinates
Rr586589	regulatory region 586589	493 bp distal
Rr586590	regulatory region 586590	1715 bp proximal