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rs219548269 SNP Detail
Summary
  • ID
    rs219548269
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:143867901 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAATGACAGA GGGAAAACTT
    CCCCCAGCCT TCTTGTCTGA GTCTACGCTG CTAAACACTC TGCTACATTG TCTCAATTAA
    TGGGTTCCTC TGAATTAATG AATTCCTCTG AAAACTTTGG CTCTCCCATA TAAAGATAGA
    TGGTCCCTGA TGTCCCAGCA CTATGAGAGA GGGGAGGTGG GGGGGGGGGG AGGGAGGAAG
    K
    GAAGAAAGGA GGGAGGGTGG GGGGAGTGTG AAACAATGGG AAGCTGTGGG TGATTAGTTC
    AAAATACAGC AAATCTAAAA ATACTCTGGC TTCACTTTGA GATATTTGTC CAACAAGAGT
    GGAACAACTT TAATTAGTGT AACAGGACAA TAGGAATTAA ATTGGCTCGG TCACAAGATT
    TTTAAGGGAT GACACTGACG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PWK/PhJ
QSi3/Ianm
RF/J
SPRET/EiJ
SWR/J
ZALENDE/EiJ
ss360061552 MGP_WTSI_3_143825104 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T G T G T T G T T T G T T G T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZW/LacJ
PWK/PhJ
QSi3/Ianm
RF/J
SPRET/EiJ
SWR/J
ZALENDE/EiJ
rs219548269 SNP T T T T T T T T T T T G T G T T G T T T G T T G T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss360061552 MGP_WTSI_3_143825104 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:143867901 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm34162 predicted gene, 34162 within coordinates
Rr586589 regulatory region 586589 493 bp distal
Rr586590 regulatory region 586590 1715 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory