rs219481173 SNP Detail

Summary

• ID
  rs219481173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108469139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTCTAG AACCTGAAAA
  TCATGACTAT AAAATTGTTT GAAGCAATCT GGAAAAATTA CAAGTGCTCC ATCACTAATA
  AAAGGCGGCT TCTAAATCCA CCCTTTGCGG TATTAGCCAG AAGCTCCAGA TGGAGCCACC
  CAACTAGGAC TTTAGTCAAA CGAATGAAGG CTTTTTTTGG TGTCTTTTAA ATTAACAAAA
  Y
  AAACAAACAA ACAAAAAACT TTGGGGGTTG TCTACAATCA CCTCCCCCGC AAACGGTGGG
  ATTTGATACC ATTACTAAGT CCTTTCAACC AGCTTACTGT CAGAAAGTAT GAGACCTTAG
  GGAACTGGAT AACAGCTTCT CTCCCCTGGG GACTAACAAC ATAATTCTAT AGTGAACGAC
  CTCCCCAGCG GCCAGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359167806	MGP_WTSI_3_108364741	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219481173					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359167806	MGP_WTSI_3_108364741	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108469139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13705	CpG island 13705	300 bp proximal
Rr367532	regulatory region 367532	568 bp upstream
Rr397938	regulatory region 397938	710 bp upstream
Rr583265	regulatory region 583265	within coordinates
Rr583266	regulatory region 583266	337 bp proximal
Rr583267	regulatory region 583267	1029 bp proximal
Rr583268	regulatory region 583268	1703 bp proximal
Tmem167b	transmembrane protein 167B	Intron
Tssr35153	transcription start site region 35153	330 bp downstream
Tssr35154	transcription start site region 35154	505 bp downstream
Tssr35155	transcription start site region 35155	526 bp downstream
Tssr35156	transcription start site region 35156	601 bp downstream