rs219447058 SNP Detail

Summary

• ID
  rs219447058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22537041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTATTTT CTATACTCAT
  TCTAATAGTC AAAGCCCCCC TCTGTGTCTC TCATTTCCTT CTTCACAGCA TCTGCATACT
  GCTATTCCTC TCTCTAGAGT CCCTTCTCCC ATCCCATAAA CTATATTCTA AATGCTCACT
  CTTGTGTAAC AAACTTTGAT TAGTCTAAAA CAGCTACAAG TTATGGGATA TCCTTCCTAT
  R
  TTTAGGTATG CGGCTTCAGT GCTGATCCAA CACATATAGA CATCTTTTGA GGGTTCTTGC
  AAGATATTGT TTCTTATTAA AAAGAGTAGC CCTTAGGAGG AAGGCCTTTT TGGTGACATC
  CAACTTGCTT CCTTGTTTGA ATACAATCAT GTGAGTATGT AAAATTCAGA GCTGTGGAGG
  GCATGTTGCA ACCCCACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321765808	CHEV_6_22487042	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219447058					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22537041 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	367 bp proximal
Rr627120	regulatory region 627120	423 bp proximal