rs219431827 SNP Detail

Summary

• ID
  rs219431827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9035049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTGATG AGCCATCTGA
  GAGGAGGCCT TGACTTCCCA GGCCTTTGTC ACTTGGCTAG GGAACACACT GTGGGCACAC
  TGGGTCCTAG GTAATGTCGT GTCTGTGTGA ACATCAGAGT GCACTAAATC TCACTTACAG
  ATGCGTGGAC CCATTGTTAT ATTAGGGACC TAGAGGGAAA GAGTTTTGGC TCACAGATTT
  R
  GTGAACTCTC TCATCGTGCA GGCTGCCCAG CTTACAGCTG AAAGCCAGGA AGGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGCGCTG GGGTCCCATG
  ATTCCCTTGA AAGGAACACT CTCCATGACC TGGTGTCTCC GTGCGGTATT CAACGCAAGA
  AACCTTGGGG ACACTCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320649340	CHEV_3_8969989	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219431827					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9035049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr573351	regulatory region 573351			837 bp distal
Rr573352	regulatory region 573352			1300 bp distal
Rr573353	regulatory region 573353			1124 bp distal
Rr573354	regulatory region 573354			133 bp distal
Rr573355	regulatory region 573355			149 bp proximal
Rr573356	regulatory region 573356			1249 bp proximal
Tpd52	tumor protein D52			Intron
				Noncoding-Transcript-Variant