rs219409045 SNP Detail

Summary

• ID
  rs219409045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGAACC AGGGCGTCCC
  ACCTTTCCTA GTGCACCTCA GGAGTTTCTC CAGAGGCCCA GCTCCCGACT CTCACGTCCC
  TACAATTCCA GACCCCATAA TCCCGTACCT TCTTTTTCTC TCAACTCCTA TCTTCAGTTT
  CGTTCCTTCC CTCTCTTCTT GCTCCAGAAC ACCTTATAAC ACAGTTAAAC AGTTCACTGA
  Y
  ATAAACCTGA TCACATGCCT TTGTCTGTAA ACCCTATTCT AGGTGAGATG GTGCAGCTGA
  GGCAGGGAGA CCTGAAGTCA CCCAGCCACT GATTTCCCAG GATTCTCCCT GGGCTTTCTG
  CTTGGCTTTA AGAACTATAA ATGAGTATTT ACAAAAACAA AATGTTGCAG CATCTGAAGA
  CAGGCTAGTT AAAACAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368651711	MGP_WTSI_6_67486221	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219409045					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368651711	MGP_WTSI_6_67486221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	351 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1415 bp distal
Rr631669	regulatory region 631669	972 bp distal
Rr631670	regulatory region 631670	421 bp distal
Rr631671	regulatory region 631671	151 bp distal
Rr631672	regulatory region 631672	248 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	431 bp upstream
Tssr1872	transcription start site region 1872	1446 bp upstream
Tssr61255	transcription start site region 61255	1482 bp upstream
Tssr61256	transcription start site region 61256	1001 bp upstream
Tssr61257	transcription start site region 61257	530 bp upstream
Tssr61258	transcription start site region 61258	425 bp upstream
Tssr61259	transcription start site region 61259	357 bp upstream