rs219369880 SNP Detail

Summary

• ID
  rs219369880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59850725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAGCCTCA AAAACTGTTA AAGGTGCCTT
  GTGGTTCCCA CTTCAGCTGT GTCCCACTTG TGTCTGGTAG AACATTTTAG AGAGTCTGGC
  ACTTGGGTGA CCCTCTCCTG ATTTCCAGAG TCATACTGCT TTTCCTATCA CCTTTTACCC
  W
  GTTCTTTTTG TTGCCTATTC TTTAGATTCT AAGTTAGCGT CTGAGGGTAG GATGGAGAGG
  AGTAAGCTGC TGTGGGTAAC TTACTGAGAT GGTCTAGAAG TCTATATTTA TAATTGTtgt
  ctgtctgttt gtctgtctgt ctATTTTTtt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141561	CHEV_4_59863597	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219369880					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59850725 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	within coordinates
Rr593160	regulatory region 593160	30 bp distal
Rr593161	regulatory region 593161	288 bp distal
Rr593162	regulatory region 593162	515 bp proximal
Snx30	sorting nexin family member 30	Intron