rs219368253 SNP Detail

Summary

• ID
  rs219368253
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172340978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTAT GGAGATCTGG
  CTGCTTTGCA TGGGAGCTGA CAGAGAGCCG GAGGCATTGC TCCTGGATCC TGCTTCTGTG
  GGTTTCTGTG CTCAAAGCAG TCTGACCTTC TCAGACCTCT CTCAGATAGC CCCAGCAACA
  GAAGCCACTA CGACCACCAA GACAATACCC AAGAGGTGTG CTTTCAAGAC ACTTGGATAT
  K
  TATTGATCCC AGAGAGGCTT GTAACCTCCT GGTAAGGCTT TAGTACTTCA TATCCTTTGG
  AGAGAGCAGA AAGGCAGAAG CTTATGGAGT ACGAGTGATT TGCCTGGAGT CCTAGGGTTT
  CTGGGAACAG AAAAGCTATG CGTTACATAC AGATCTCCTG TTCGCTTCTG GTTCTCAGAA
  CCAAAAGTGT TGCAACCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352407801	MGP_WTSI_1_174443542	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219368253					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352407801	MGP_WTSI_1_174443542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172340978 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	within coordinates
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	174 bp downstream
Rr396591	regulatory region 396591	623 bp upstream
Rr423601	regulatory region 423601	209 bp distal
Rr423602	regulatory region 423602	376 bp distal
Rr423603	regulatory region 423603	within coordinates
Rr423604	regulatory region 423604	593 bp proximal
Rr423605	regulatory region 423605	728 bp proximal
Rr423606	regulatory region 423606	1497 bp proximal
Tssr302	transcription start site region 302	588 bp downstream
Tssr10235	transcription start site region 10235	154 bp downstream
Tssr10236	transcription start site region 10236	710 bp upstream
Tssr15228	transcription start site region 15228	522 bp downstream