rs219307582 SNP Detail

Summary

• ID
  rs219307582
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106716034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGTCTG TACTCCCCGC
  ATTCAAGAAG GCAAGGCAGA GCTGGGTGTG GTGGCGCACT CCTTTAATCC CAGCACTTGG
  GAGGCAGAGG CAGGCGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA
  GGACAGCCAG GGCTATACAG AGAAACCCTG TCTCAAAAAA CCAAAAAAAA AAAAAAAGAA
  G
  AAGAAGAAGG TGAGGCAGGA GGTGAGGACA TCCTTGAGAC TTTGCCTAAA TAAATAAAAA
  TATTTGGGCT GAAGAGATGG CTCAGTGCTT ATGAGCACTG ACAGTAGAGG GCCCAGGTTC
  GGTTCCCAAC ACCCATGTGG TGGTTCACAA CTATAACTCC AGTTCCACAG GATCCAACCT
  GCCCTGGTAT ATGAGCAACA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss362746650	MGP_WTSI_4_106531442	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs219307582					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746650	MGP_WTSI_4_106531442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106716034 () rs orientation: forward

Symbol	Name	Function Class
Gm12746	predicted gene 12746	319 bp upstream
Gm69780	predicted gene, 69780	434 bp downstream
Gm70282	predicted gene, 70282	1004 bp upstream
Rr376973	regulatory region 376973	161 bp upstream
Rr596849	regulatory region 596849	765 bp proximal
Rr596850	regulatory region 596850	1015 bp proximal
Tssr38192	transcription start site region 38192	884 bp upstream
Tssr42651	transcription start site region 42651	540 bp downstream
Tssr42652	transcription start site region 42652	750 bp downstream
Tssr42653	transcription start site region 42653	761 bp downstream