rs219274090 SNP Detail

Summary

• ID
  rs219274090
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105709283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC GACCAGACCC GGTGGAGCCT
  G
  TGGGCCATTG TAATGACAAC AGGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863211	CHEV_3_105604885	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219274090					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105709283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13662	CpG island 13662	165 bp distal
Rap1a	RAS-related protein 1a	631 bp upstream
Rr582781	regulatory region 582781	1119 bp distal
Rr582782	regulatory region 582782	693 bp distal
Rr582783	regulatory region 582783	141 bp distal
Rr582784	regulatory region 582784	1632 bp proximal
Tssr31081	transcription start site region 31081	1624 bp upstream
Tssr31082	transcription start site region 31082	1655 bp upstream
Tssr31083	transcription start site region 31083	1953 bp upstream
Tssr34930	transcription start site region 34930	1280 bp upstream
Tssr34931	transcription start site region 34931	652 bp upstream
Tssr34932	transcription start site region 34932	590 bp upstream