rs219245421 SNP Detail

Summary

• ID
  rs219245421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:78444285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAAAGA ATATAACAGG
  TTATGCCTTT GTAAATTTCT CTGATCTTCA AAGCCCACAT AGATAATGTG AAGAACAAAT
  ACAGATATTC TCTCTTTTGT GTTCTCTCAA AATCATGGGT ACAAATGCCT ATAATCTCAC
  AAAAGAGATT TGCAAACCCT CATTGAGGAA CTTCATAAAG GCTAACCACA GTCACATTGA
  Y
  GTCATCTGAA GACTAGGGAC TTCCACAGAG CTTAGGAACT TTCTTTTGCC CCAGTTATAA
  TTCAGAATAT TAGCTCTAGT TATAATTCAG GTTTTTCTCA TAGAAACACA GAAAATGAGC
  TTGGGAACAG AACTGATGAG AGAGAAATCA GATGGGAGGA GATGATATCT CACCAGTGTC
  GGGTCATGGA GCCCAATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368911281	MGP_WTSI_6_78417296	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219245421					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368911281	MGP_WTSI_6_78417296	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78444285 () rs orientation: forward

Symbol	Name	Function Class
Reg3g	regenerating islet-derived 3 gamma	Intron
Tssr1897	transcription start site region 1897	457 bp upstream
Tssr1898	transcription start site region 1898	403 bp upstream
Tssr1899	transcription start site region 1899	227 bp downstream
Tssr1900	transcription start site region 1900	580 bp upstream
Tssr57223	transcription start site region 57223	1031 bp downstream
Tssr57224	transcription start site region 57224	886 bp downstream
Tssr57225	transcription start site region 57225	523 bp downstream
Tssr57226	transcription start site region 57226	477 bp downstream
Tssr57227	transcription start site region 57227	180 bp upstream
Tssr61553	transcription start site region 61553	986 bp upstream
Tssr61554	transcription start site region 61554	963 bp upstream
Tssr61555	transcription start site region 61555	935 bp upstream
Tssr61556	transcription start site region 61556	892 bp upstream
Tssr61557	transcription start site region 61557	774 bp upstream
Tssr61558	transcription start site region 61558	474 bp upstream
Tssr61559	transcription start site region 61559	436 bp upstream
Tssr61560	transcription start site region 61560	408 bp upstream
Tssr61561	transcription start site region 61561	202 bp downstream
Tssr61562	transcription start site region 61562	214 bp downstream
Tssr61563	transcription start site region 61563	243 bp downstream
Tssr61564	transcription start site region 61564	276 bp downstream
Tssr61565	transcription start site region 61565	539 bp downstream
Tssr61566	transcription start site region 61566	576 bp downstream
Tssr61567	transcription start site region 61567	1220 bp downstream
Tssr61568	transcription start site region 61568	1240 bp downstream
Tssr61569	transcription start site region 61569	1561 bp downstream