rs219233714 SNP Detail

Summary

• ID
  rs219233714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90382011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCTCAGA AGTTAAGAGC ACTGACTGCT CTTCCAGAGG
  TCCTGAGTTC AATTCCCAGC AACCACATGG TGGCTCAGGA CCATATATCT GATGCCCTCT
  Y
  CAGGCCTGCA AACATACATG CAGGCAAAAT ACTGTATACA TAATCAATCA ATCAATCTTA
  AAAAAAAAAA AAGAAAAGAA AAAAGGAAAG GAAAGAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837841	CHEV_3_90278626	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219233714					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90382011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13463	CpG island 13463	1141 bp proximal
Ilf2	interleukin enhancer binding factor 2	1422 bp upstream
n-TMcat11	nuclear encoded tRNA methionine 11 (anticodon CAT)	1156 bp downstream
Rr397811	regulatory region 397811	1192 bp upstream
Rr580369	regulatory region 580369	1989 bp distal
Rr580370	regulatory region 580370	within coordinates
Rr580371	regulatory region 580371	953 bp proximal
Rr580372	regulatory region 580372	1289 bp proximal
Rr580373	regulatory region 580373	1454 bp proximal
Rr580374	regulatory region 580374	1712 bp proximal
Tssr30205	transcription start site region 30205	1417 bp upstream