rs219222008 SNP Detail

Summary

• ID
  rs219222008
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129998205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTGGAAA GTGGAGGCAG
  GAGAGTCAAG AATTCCAGGT CAGTCTTGAC TACATAGCAA GTTCTAAGCC AGTCTGGGCT
  ATGCGGGACC CTAATTGAAG AACCAAGAAA AGGCCAAATC ACCTTCTTAC CTCATCCTCC
  CAAGGGCTGG AGGATGAGGC TTTTTTAAAT AAATAAATAT AAATATATAT ATATATATAT
  W
  TATTTTTTCA GGAATGGGTT TTTTTTGTAC AGCCTTGGCT GTCCTAAAAG TAGCTCTTTA
  GACCAGGCTG GCCTCCAACT CACAGAGATC TGCCTGCCTC TGCCTCCCAA GTGCTGGGAT
  TAAAGGTGTG CACTACCACT GCCTGGCTGG CATCAGGCTC TTACAATGTC CTGTTCTAGA
  CCATGAGAGT GGCACCTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317087	CHEV_4_129781656	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219222008					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129998205 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1043 bp downstream
Rr600439	regulatory region 600439	1844 bp distal
Rr600440	regulatory region 600440	1345 bp distal
Rr600441	regulatory region 600441	571 bp distal
Rr600442	regulatory region 600442	90 bp proximal
Tssr39229	transcription start site region 39229	474 bp upstream