rs219213156 SNP Detail

Summary

• ID
  rs219213156
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113697298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTGAG CTCTGAGGTC
  TTGCTTAGTT GTGGTATAAC CTTGGCTTGC CTCCTTCCAT GTGAGATGAT GTTGCCACCA
  GGAGAACTTG TCCAATTTTG GACAAAATTG GACAAGATTT TGTCCAATTT TGCTTTGCCA
  CTGAGGCTGT TGTGGCTTCT GCACACCGGT CACATAGAGA CCTGCTTCTG GGGTGTTCTC
  A
  AAAAAGGGCT GCACTGCCAT CCCCAGGAGC AAGTGTCGGG AAAGGTGCAC CTGGTGGTTA
  CACCTTACTG CTTGTCTGTG TCTTGCTTGC GTTTGCTGGT TGATTTTGTC TTATACTGTT
  GGGCATAGTC CCCAGGGCCT TGTTTTTGGT AGGCAGTTCT CACTGAGCCA TTCTCCAAGC
  CCGTTCTGGT GTTTGTTAAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911650	CHEV_6_113670331	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219213156					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113697298 () rs orientation: forward

Symbol	Name	Function Class
Ghrl	ghrelin	457 bp upstream
Gm44033	predicted gene, 44033	1059 bp downstream
Rr636588	regulatory region 636588	771 bp proximal
Tssr62470	transcription start site region 62470	869 bp upstream
Tssr62471	transcription start site region 62471	454 bp upstream