rs219206499 SNP Detail

Summary

• ID
  rs219206499
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACCCAC ATACACACGC
  ACCCACATAC ACAAGCACAC ACATACACAC GCACCCACAT ATACAAGCAC ACACATACAC
  ACGCACCCAC ATACACATGC ACCCACATGC ACACGCACGC ACACACATAC ATACACACGC
  ACCCACACAC ACCCACATAC ACATGCACCC ACATACACAT GCACCCACAT GCACACGCAC
  A
  CACATACACA CATACAACTT GTACACACAT ATGTGTGAGT ACAAATATTT TTTTAAATAC
  CTAATGCCTT TAATCCCAGC CCTCGGTAGG CAGAGGCCAG CAGATCTATG AGTTCAAGGC
  CAGTTTGGGC TACAGAGTGA GCTCTAGAAT AGCCAGAGCT ACACAGAAAA ACCCTGTCTT
  GAACAAACAA ACAAAACATT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028626	CHEV_3_151978188	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219206499					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020861 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			within coordinates
Rr587524	regulatory region 587524			369 bp proximal
Rr587525	regulatory region 587525			587 bp proximal
Rr587526	regulatory region 587526			631 bp proximal
Rr587527	regulatory region 587527			1050 bp proximal
Rr587528	regulatory region 587528			1342 bp proximal