rs219198623 SNP Detail

Summary

• ID
  rs219198623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101139923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACAGTGTG TCAAATGAAA GTCAGTACTC
  AGGGCTGACA TTCATATCTC TTGAGCAGAT GCTTCTAATG CAGCTAACAT TACACCTGGA
  AGTGGCATTT GCTTATTCAT AAATGAGCAG ATTAAGCACT GATCCAACAT TTCTCAGCAG
  Y
  ACCCACCATC ATGGAAGGTA AATTGGTACC ACTGTCAATA TCCTTTGAAC TATCATTTGG
  GAAGAGATTA GGGCGGGGAA AGTCCTCTCT TCCAAGTCCC TCAACTGCTG CCTTGTCCAT
  CTGtccttcc ttcctccctt ctctccctcc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229187	CHEV_4_100955331	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219198623					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101139923 () rs orientation: forward

Symbol	Name	Function Class
Gm12801	predicted gene 12801	1482 bp upstream
Gm69021	predicted gene, 69021	within coordinates
Rr376921	regulatory region 376921	299 bp upstream
Rr596107	regulatory region 596107	1222 bp proximal
Rr596108	regulatory region 596108	1393 bp proximal