rs219171582 SNP Detail

Summary

• ID
  rs219171582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100690194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGAGGGA TCCATGGCTC
  CAGTCTCATA TGTAGCAGAG GATGACCTTG TTGGGCATCA ATGAGAGGAG AGGCCCTTGG
  TCCTGTGAAG GCTTGATGCC CCAGTGTAGG GGAATGTGAA GGTGGGGAGG TGAGGGTAGG
  GGAACACCCT CATAGAAGCA GGGGGGAGGG GGATGGGACA GGGGGCTGGG GGGGGCGAGG
  Y
  GGGGATCCAG AAAGGGGGTA GCATTTGAAA TGTAAATAAA TAAAATACCC AATAAAAAAG
  AGAAAACCTA AACATGTGTT TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAT
  AATAATAATT TTGTCTGTCA AGCCCTCCTC AGAAGTTTTG ACTCTGGAGT AAATAGGAAA
  GGAATGTATG CAGTGCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss362600722	MGP_WTSI_4_100505602	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs219171582					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362600722	MGP_WTSI_4_100505602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100690194 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	711 bp proximal